A lyophilized open-source RT-LAMP assay for molecular diagnostics in resource-limited settings.
Matl Martin, Kellner Max J, Ansah Felix, Grishkovskaya Irina, Handler Dominik, Heinen Robert, Bauer Benedikt, Menéndez-Arias Luis, Auer Thomas O, Prieto-Godino Lucia L, Penninger Josef M, Awandare Gordon A, Brennecke Julius, Pauli Andrea
ERH regulates type II interferon immune signaling through post-transcriptional regulation of JAK2 mRNA.
Soderholm Adrian, Vunjak Milica, de Almeida Melanie, Popitsch Niko, Podvalnaya Nadezda, Araguas-Rodriguez Pablo, Scinicariello Sara, Nischwitz Emily, Butter Falk, Ketting René F, Ameres Stefan L, Müller-McNicoll Michaela, Zuber Johannes, Versteeg Gijs A
Rnalib: a Python library for custom transcriptomics analyses.
Popitsch Niko, Ameres Stefan L
Proteome-scale tagging and functional screening in mammalian cells by ORFtag.
Nemčko Filip, Himmelsbach Moritz, Loubiere Vincent, Yelagandula Ramesh, Pagani Michaela, Fasching Nina, Brennecke Julius, Elling Ulrich, Stark Alexander, Ameres Stefan L
Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework.
Popitsch Niko, Neumann Tobias, von Haeseler Arndt, Ameres Stefan L
Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types.
Mandlbauer Ariane, Sun Qiong, Popitsch Niko, Schwickert Tanja, Spanova Miroslava, Wang Jingkui, Ameres Stefan L, Busslinger Meinrad, Cochella Luisa
mRNA stability and mA are major determinants of subcellular mRNA localization in neurons.
Loedige Inga, Baranovskii Artem, Mendonsa Samantha, Dantsuji Sayaka, Popitsch Niko, Breimann Laura, Zerna Nadja, Cherepanov Vsevolod, Milek Miha, Ameres Stefan, Chekulaeva Marina
SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.
Bhat Pooja, Cabrera-Quio Luis E, Herzog Veronika A, Fasching Nina, Pauli Andrea, Ameres Stefan L
Hijacking of transcriptional condensates by endogenous retroviruses.
Asimi Vahid, Sampath Kumar Abhishek, Niskanen Henri, Riemenschneider Christina, Hetzel Sara, Naderi Julian, Fasching Nina, Popitsch Niko, Du Manyu, Kretzmer Helene, Smith Zachary D, Weigert Raha, Walther Maria, Mamde Sainath, Meierhofer David, Wittler Lars, Buschow René, Timmermann Bernd, Cisse Ibrahim I, Ameres Stefan L, Meissner Alexander, Hnisz Denes
A Rapid, Highly Sensitive and Open-Access SARS-CoV-2 Detection Assay for Laboratory and Home Testing.
Kellner Max J, Ross James J, Schnabl Jakob, Dekens Marcus P S, Matl Martin, Heinen Robert, Grishkovskaya Irina, Bauer Benedikt, Stadlmann Johannes, Menéndez-Arias Luis, Straw Andrew D, Fritsche-Polanz Robert, Traugott Marianna, Seitz Tamara, Zoufaly Alexander, Födinger Manuela, Wenisch Christoph, Zuber Johannes, Pauli Andrea, Brennecke Julius
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.
Huth Michelle, Santini Laura, Galimberti Elena, Ramesmayer Julia, Titz-Teixeira Fabian, Sehlke Robert, Oberhuemer Michael, Stummer Sarah, Herzog Veronika, Garmhausen Marius, Romeike Merrit, Chugunova Anastasia, Leesch Friederike, Holcik Laurenz, Weipoltshammer Klara, Lackner Andreas, Schoefer Christian, von Haeseler Arndt, Buecker Christa, Pauli Andrea, Ameres Stefan L, Smith Austin, Beyer Andreas, Leeb Martin
Transcriptome-Wide Profiling of RNA Stability.
Fasching Nina, Petržílek Jan, Popitsch Niko, Herzog Veronika A, Ameres Stefan L
Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets.
Bhat Pooja, Burkard Thomas R, Herzog Veronika A, Pauli Andrea, Ameres Stefan L
Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq.
Yelagandula Ramesh, Bykov Aleksandr, Vogt Alexander, Heinen Robert, Özkan Ezgi, Strobl Marcus Martin, Baar Juliane Christina, Uzunova Kristina, Hajdusits Bence, Kordic Darja, Suljic Erna, Kurtovic-Kozaric Amina, Izetbegovic Sebija, Schaeffer Justine, Hufnagl Peter, Zoufaly Alexander, Seitz Tamara, Födinger Manuela, Allerberger Franz, Stark Alexander, Cochella Luisa, Elling Ulrich
Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Xie Wei, Sowemimo Ivica, Hayashi Rippei, Wang Juncheng, Burkard Thomas R, Brennecke Julius, Ameres Stefan L, Patel Dinshaw J
Conformation of sister chromatids in the replicated human genome.
Mitter Michael, Gasser Catherina, Takacs Zsuzsanna, Langer Christoph C H, Tang Wen, Jessberger Gregor, Beales Charlie T, Neuner Eva, Ameres Stefan L, Peters Jan-Michael, Goloborodko Anton, Micura Ronald, Gerlich Daniel W
Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion.
Herzog Veronika A, Fasching Nina, Ameres Stefan L
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis.
Reichholf Brian, Herzog Veronika A, Fasching Nina, Manzenreither Raphael A, Sowemimo Ivica, Ameres Stefan L
Publisher Correction: Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
Matsushima Wayo, Herzog Veronika A, Neumann Tobias, Gapp Katharina, Zuber Johannes, Ameres Stefan L, Miska Eric A
Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
Matsushima Wayo, Herzog Veronika A, Neumann Tobias, Gapp Katharina, Zuber Johannes, Ameres Stefan L, Miska Eric A