The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma's information flow.
Zhong Ziming, Bailey Mark, Kim Yong-In, Afsharyan Nazanin P, Parker Briony, Arathoon Louise, Li Xiaowei, Rundle Chelsea A, Behrens Andrew, Nedialkova Danny, Slavov Gancho, Hassani-Pak Keywan, Lilley Kathryn S, Theodoulou Frederica L, Mott Richard
Translon: a single term for translated regions.
Świrski Michał I, Tierney Jack A S, Albà M Mar, Andreev Dmitry E, Aspden Julie L, Atkins John F, Bassani-Sternberg Michal, Berry Marla J, Biffo Stefano, Boris-Lawrie Kathleen, Borodovsky Mark, Brierley Ian, Brook Matthew, Brunet Marie A, Bujnicki Janusz M, Caliskan Neva, Calviello Lorenzo, Carvunis Anne-Ruxandra, Cate Jamie H D, Cenik Can, Chang Kung Yao, Chen Yiwen, Chothani Sonia, Choudhary Jyoti S, Clark Patricia L, Clauwaert Jim, Cooley Lynn, Dassi Erik, Dean Kellie, Diaz Jean-Jacques, Dieterich Christoph, Dikstein Rivka, Dinman Jonathan D, Dmitriev Sergey E, Dontsova Olga A, Dunham Christine M, Eswarappa Sandeep M, Farabaugh Philip J, Faridi Pouya, Fierro-Monti Ivo, Firth Andrew E, Gatfield David, Gebauer Fátima, Gelfand Mikhail S, Gray Nicola K, Green Rachel, Hill Chris H, Hou Ya-Ming, Hübner Norbert, Ignatova Zoya, Ivanov Pavel, Iwasaki Shintaro, Johnson Rory, Jomaa Ahmad, Jovanovic Marko, Jungreis Irwin, Kellis Manolis, Kieft Jeffrey S, Kochetov Alex V, Koonin Eugene V, Korostelev Andrei A, Kufel Joanna, Kulakovskiy Ivan V, Kurian Leo, Lafontaine Denis L J, Larsson Ola, Loughran Gary, Lukeš Julius, Mariotti Marco, Martens-Uzunova Elena S, Martinez Thomas F, Matsumoto Akinobu, McManus Joel, Medenbach Jan, Melnikov Sergey V, Menschaert Gerben, Merchante Catharina, Mikl Martin, Miller W Allen, Mühlemann Oliver, Namy Olivier, Nedialkova Danny D, Nosek Jozef, Orchard Sandra, Ozretić Petar, Pertea Mihaela, Pervouchine Dmitri D, Romão Luísa, Ron David, Roucou Xavier, Rubtsova Maria P, Ruiz-Orera Jorge, Saghatelian Alan, Salzberg Steven L, Seale Lucia A, Seoighe Cathal, Sergiev Petr V, Shah Premal, Shirokikh Nikolay, Slavoff Sarah A, Sonenberg Nahum, Stasevich Timothy J, Szczesny Roman J, Tamm Tiina, Tchórzewski Marek, Topisirovic Ivan, Tremblay Michel L, Tuller Tamir, Ulitsky Igor, Valášek Leoš Shivaya, Van Damme Petra, Viero Gabriella, Vizcaino Juan Antonio, Vogel Christine, Wallace Edward W J, Weissman Jonathan S, Westhof Eric, Whiffin Nicola, Wilson Daniel N, Xie Zhi, Yewdell Jonathan W, Yordanova Martina M, Yu Chien-Hung, Yurchenko Vyacheslav, Zagrovic Bojan, Valen Eivind, Baranov Pavel V
Altered translation elongation contributes to key hallmarks of aging in the killifish brain.
Di Fraia Domenico, Marino Antonio, Lee Jae Ho, Kelmer Sacramento Erika, Baumgart Mario, Bagnoli Sara, Balla Till, Schalk Felix, Kamrad Stephan, Guan Rui, Caterino Cinzia, Giannuzzi Chiara, Tomaz da Silva Pedro, Sahu Amit Kumar, Gut Hanna, Siano Giacomo, Tiessen Max, Terzibasi-Tozzini Eva, Fornasiero Eugenio F, Gagneur Julien, Englert Christoph, Patil Kiran R, Correia-Melo Clara, Nedialkova Danny D, Frydman Judith, Cellerino Alessandro, Ori Alessandro
Comparative CRISPRi screens reveal a human stem cell dependence on mRNA translation-coupled quality control.
Rodschinka Geraldine, Forcelloni Sergio, Kühner Felix M, Wani Sascha, Riemenschneider Henrick, Edbauer Dieter, Behrens Andrew, Nedialkova Danny D
ADAT3 variants disrupt the activity of the ADAT tRNA deaminase complex and impair neuronal migration.
Del-Pozo-Rodriguez Jordi, Tilly Peggy, Lecat Romain, Vaca Hugo Rolando, Mosser Laureline, Brivio Elena, Balla Till, Gomes Marina Vitoria, Ramos-Morales Elizabeth, Schwaller Noémie, Salinas-Giegé Thalia, VanNoy Grace, England Eleina M, Kern Lovgren Alysia, O'Leary Melanie, Chopra Maya, Meave Ojeda Naomi, Toosi Mehran Beiraghi, Eslahi Atieh, Alerasool Masoome, Mojarrad Majid, Pais Lynn S, Yeh Rebecca C, Gable Dustin L, Hashem Mais O, Abdulwahab Firdous, Rakiz Alqurashi Muath, Sbeih Loai Z, Adas Blanco Omar Abu, Khater Renad Abu, Oprea Gabriela, Rad Aboulfazl, Alzaidan Hamad, Aldhalaan Hesham, Tous Ehab, Alsagheir Afaf, Alowain Mohammed, Tamim Abdullah, Alfayez Khowlah, Alhashem Amal, Alnuzha Aisha, Kamel Mona, Al-Awam Bashayer S, Elnaggar Walaa, Almenabawy Nihal, O'Donnell-Luria Anne, Neil Jennifer E, Gleeson Joseph G, Walsh Christopher A, Alkuraya Fowzan S, AlAbdi Lama, Elkhateeb Nour, Selim Laila, Srivastava Siddharth, Nedialkova Danny D, Drouard Laurence, Romier Christophe, Bayam Efil, Godin Juliette D
Correcting a pathogenic mitochondrial DNA mutation by base editing in mice.
Barrera-Paez Jose D, Bacman Sandra R, Balla Till, Van Booven Derek, Gannamedi Durga P, Stewart James B, Mok Beverly, Liu David R, Lombard David B, Griswold Anthony J, Nedialkova Danny D, Moraes Carlos T
The dynamics and functional impact of tRNA repertoires during early embryogenesis in zebrafish.
Reimão-Pinto Madalena M, Behrens Andrew, Forcelloni Sergio, Fröhlich Klemens, Kaya Selay, Nedialkova Danny D
Selective gene expression maintains human tRNA anticodon pools during differentiation.
Gao Lexi, Behrens Andrew, Rodschinka Geraldine, Forcelloni Sergio, Wani Sascha, Strasser Katrin, Nedialkova Danny D
RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks.
Zhao Shubo, Cordes Jacqueline, Caban Karolina M, Götz Maximilian J, Mackens-Kiani Timur, Veltri Anthony J, Sinha Niladri K, Weickert Pedro, Kaya Selay, Hewitt Graeme, Nedialkova Danny D, Fröhlich Thomas, Beckmann Roland, Buskirk Allen R, Green Rachel, Stingele Julian
Experimental and computational workflow for the analysis of tRNA pools from eukaryotic cells by mim-tRNAseq.
Behrens Andrew, Nedialkova Danny D
High-resolution quantitative profiling of tRNA abundance and modification status in eukaryotes by mim-tRNAseq.
Behrens Andrew, Rodschinka Geraldine, Nedialkova Danny D