SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.
Bhat, Pooja; Cabrera-Quio, Luis E; Herzog, Veronika A; Fasching, Nina; Pauli, Andrea; Ameres, Stefan L
A Rapid, Highly Sensitive and Open-Access SARS-CoV-2 Detection Assay for Laboratory and Home Testing.
Kellner, Max J; Ross, James J; Schnabl, Jakob; Dekens, Marcus P S; Matl, Martin; Heinen, Robert; Grishkovskaya, Irina; Bauer, Benedikt; Stadlmann, Johannes; Menéndez-Arias, Luis; Straw, Andrew D; Fritsche-Polanz, Robert; Traugott, Marianna; Seitz, Tamara; Zoufaly, Alexander; Födinger, Manuela; Wenisch, Christoph; Zuber, Johannes; Pauli, Andrea; Brennecke, Julius
Transcriptome-Wide Profiling of RNA Stability.
Fasching, Nina; Petrzílek, Jan; Popitsch, Niko; Herzog, Veronika A; Ameres, Stefan L
SLAMseq resolves the kinetics of maternal and zygotic gene expression in early zebrafish embryogenesis
Bhat, Pooja; Cabrera-Quio, Luis E.; Herzog, Veronika A.; Fasching, Nina; Pauli, Andrea; Ameres, Stefan L.
Hijacking of transcriptional condensates by endogenous retroviruses.
Asimi, Vahid; Sampath Kumar, Abhishek; Niskanen, Henri; Riemenschneider, Christina; Hetzel, Sara; Naderi, Julian; Fasching, Nina; Popitsch, Niko; Du, Manyu; Kretzmer, Helene; Smith, Zachary D; Weigert, Raha; Walther, Maria; Mamde, Sainath; Meierhofer, David; Wittler, Lars; Buschow, René; Timmermann, Bernd; Cisse, Ibrahim I; Ameres, Stefan L; Meissner, Alexander; Hnisz, Denes
GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data.
Giacopuzzi, Edoardo; Popitsch, Niko; Taylor, Jenny C
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.
Huth, Michelle; Santini, Laura; Galimberti, Elena; Ramesmayer, Julia; Titz-Teixeira, Fabian; Sehlke, Robert; Oberhuemer, Michael; Stummer, Sarah; Herzog, Veronika; Garmhausen, Marius; Romeike, Merrit; Chugunova, Anastasia; Leesch, Friederike; Holcik, Laurenz; Weipoltshammer, Klara; Lackner, Andreas; Schoefer, Christian; von Haeseler, Arndt; Buecker, Christa; Pauli, Andrea; Ameres, Stefan L; Smith, Austin; Beyer, Andreas; Leeb, Martin
Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets.
Bhat, Pooja; Burkard, Thomas R; Herzog, Veronika A; Pauli, Andrea; Ameres, Stefan L
Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq.
Yelagandula, Ramesh; Bykov, Aleksandr; Vogt, Alexander; Heinen, Robert; Özkan, Ezgi; Strobl, Marcus Martin; Baar, Juliane Christina; Uzunova, Kristina; Hajdusits, Bence; Kordic, Darja; Suljic, Erna; Kurtovic-Kozaric, Amina; Izetbegovic, Sebija; Schaeffer, Justine; Hufnagl, Peter; Zoufaly, Alexander; Seitz, Tamara; VCDI; Födinger, Manuela; Allerberger, Franz; Stark, Alexander; Cochella, Luisa; Elling, Ulrich
Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion.
Herzog, Veronika A; Fasching, Nina; Ameres, Stefan L
Conformation of sister chromatids in the replicated human genome.
Mitter, Michael; Gasser, Catherina; Takacs, Zsuzsanna; Langer, Christoph C H; Tang, Wen; Jessberger, Gregor; Beales, Charlie T; Neuner, Eva; Ameres, Stefan L; Peters, Jan-Michael; Goloborodko, Anton; Micura, Ronald; Gerlich, Daniel W
Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Xie, Wei; Sowemimo, Ivica; Hayashi, Rippei; Wang, Juncheng; Burkard, Thomas R; Brennecke, Julius; Ameres, Stefan L; Patel, Dinshaw J
Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets
Neumann, T; Herzog, VA; Muhar, M; von Haeseler, A; Zuber, J; Ameres, SL; Rescheneder, P
Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Kroupova, Alena; Ivascu, Anastasia; Reimão-Pinto, Madalena M; Ameres, Stefan L; Jinek, Martin
Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
Matsushima, Wayo; Herzog, Veronika A; Neumann, Tobias; Gapp, Katharina; Zuber, Johannes; Ameres, Stefan L; Miska, Eric A
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis.
Reichholf, Brian; Herzog, Veronika A; Fasching, Nina; Manzenreither, Raphael A; Sowemimo, Ivica; Ameres, Stefan L
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis
Muhar, Matthias; Ebert, Anja; Neumann, Tobias; Umkehrer, Christian; Jude, Julian; Wieshofer, Corinna; Rescheneder, Philipp; Lipp, Jesse J; Herzog, Veronika A; Reichholf, Brian; Cisneros, David A; Hoffmann, Thomas; Schlapansky, Moritz F; Bhat, Pooja; von Haeseler, Arndt; Köcher, Thomas; Obenauf, Anna C; Popow, Johannes; Ameres, Stefan L; Zuber, Johannes
Cell-type specific sequencing of microRNAs from complex animal tissues.
Alberti, Chiara; Manzenreither, Raphael A; Sowemimo, Ivica; Burkard, Thomas R; Wang, Jingkui; Mahofsky, Katharina; Ameres, Stefan L; Cochella, Luisa
Positioning Europe for the EPITRANSCRIPTOMICS challenge.
Jantsch, Michael F; Quattrone, Alessandro; O'Connell, Mary; Helm, Mark; Frye, Michaela; Macias-Gonzales, Manuel; Ohman, Marie; Ameres, Stefan; Willems, Luc; Fuks, Francois; Oulas, Anastasis; Vanacova, Stepanka; Nielsen, Henrik; Bousquet-Antonelli, Cecile; Motorin, Yuri; Roignant, Jean-Yves; Balatsos, Nikolaos; Dinnyes, Andras; Baranov, Pavel; Kelly, Vincent; Lamm, Ayelet; Rechavi, Gideon; Pelizzola, Mattia; Liepins, Janis; Holodnuka Kholodnyuk, Irina; Zammit, Vanessa; Ayers, Duncan; Drablos, Finn; Dahl, John Arne; Bujnicki, Janusz; Jeronimo, Carmen; Almeida, Raquel; Neagu, Monica; Costache, Marieta; Bankovic, Jasna; Banovic, Bojana; Kyselovic, Jan; Valor, Luis Miguel; Selbert, Stefan; Pir, Pinar; Demircan, Turan; Cowling, Victoria; Schäfer, Matthias; Rossmanith, Walter; Lafontaine, Denis; David, Alexandre; Carre, Clement; Lyko, Frank; Schaffrath, Raffael; Schwartz, Schraga; Verdel, Andre; Klungland, Arne; Purta, Elzbieta; Timotijevic, Gordana; Cardona, Fernando; Davalos, Alberto; Ballana, Ester; O Carroll, Donal; Ule, Jernej; Fray, Rupert
Principles of Systems Biology, No. 29.
Ameres, S; Zuber, j
Chromatin as a gatekeeper of chromosome replication
Mind matters. VBC mental health awareness
The multiple facets of Hop1 during meiotic prophase
Chromosomes as Mechanical Objects: from E.coli to Meiosis to Mammalian cells
Convergent evolution of CO2-fixing liquid-liquid phase separation
Viral envelope engineering for cell type specific delivery
New ways of leading: inclusive leadership and revising academic hierarchies
How an opportunistic human pathogen colonizes surfaces - From pathogen behavior to new drugs
Title to be announced
Decoding Molecular Plasticity in the Dark Proteome of the Nuclear Pore Complex
Probing the 3D genome architectural basis of neurodevelopment and aging in vivo
How to tango with four - the evolution of meiotic chromosome segregation after genome duplication
Multidimensional approach to decoding the mysteries of animal development
Connecting mitotic chromosomes to dynamic microtubules - insight from biochemical reconstitution
Membrane remodeling proteins at the junction between prokaryotes and eukaryotes
Neurodiversity in academia: strengths and challenges of neurodivergence
Gene expression dynamics during the awakening of the zygotic genome
When all is lost? Measuring historical signals
Suckers and segments of the octopus arm
Using the house mouse radiation to study the rapid evolution of genes and genetic processes
CRISPR jumps ahead: mechanistic insights into CRISPR-associated transposons
Title to be announced
Enigmatic evolutionary origin and multipotency of the neural crest cells - major drivers of vertebrate evolution
Visualising mitotic chromosomes and nuclear dynamics by correlative light and electron microscopy
Bacterial cell envelope homeostasis at the (post)transcriptional level
Polyploidy and rediploidisation in stressful times
Prdm9 control of meiotic synapsis of homologs in intersubspecific hybrids
RNA virus from museum specimens
Programmed DNA double-strand breaks during meiosis: Mechanism and evolution
Title to be announced