Proteome-scale tagging and functional screening in mammalian cells by ORFtag
Filip Nemčko, Moritz Himmelsbach, Vincent Loubiere, Ramesh Yelagandula, Michaela Pagani, Nina Fasching, Julius Brennecke, Ulrich Elling, Alexander Stark, Stefan L. Ameres
Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types
Ariane Mandlbauer, Qiong Sun, Niko Popitsch, Tanja Schwickert, Miroslava Spanova, Jingkui Wang, Stefan Ameres, Meinrad Busslinger, Luisa Cochella
Mutual homeostasis of charged proteins
Rupert Faraway, Neve Costello Heaven, Holly Digby, Oscar G. Wilkins, Anob M. Chakrabarti, Ira A. Iosub, Lea Knez, Stefan L. Ameres, Clemens Plaschka, Jernej Ule
mRNA stability and m6A are major determinants of subcellular mRNA localisation in neurones
Loedige, Inga; Baranovskii, Artem; Mendonsa, Samantha; Dantsuji, Sayaka; Popitsch, Niko; Breimann, Laura; Zerna, Nadja; Cherepanov, Vsevolod; Milek, Miha; Ameres, Stefan; Chekulaeva, Marina
Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases.
Pagnamenta, Alistair T; Camps, Carme; Giacopuzzi, Edoardo; Taylor, John M; Hashim, Mona; Calpena, Eduardo; Kaisaki, Pamela J; Hashimoto, Akiko; Yu, Jing; Sanders, Edward; Schwessinger, Ron; Hughes, Jim R; Lunter, Gerton; Dreau, Helene; Ferla, Matteo; Lange, Lukas; Kesim, Yesim; Ragoussis, Vassilis; Vavoulis, Dimitrios V; Allroggen, Holger; Ansorge, Olaf; Babbs, Christian; Banka, Siddharth; Baños-Piñero, Benito; Beeson, David; Ben-Ami, Tal; Bennett, David L; Bento, Celeste; Blair, Edward; Brasch-Andersen, Charlotte; Bull, Katherine R; Cario, Holger; Cilliers, Deirdre; Conti, Valerio; Davies, E Graham; Dhalla, Fatima; Dacal, Beatriz Diez; Dong, Yin; Dunford, James E; Guerrini, Renzo; Harris, Adrian L; Hartley, Jane; Hollander, Georg; Javaid, Kassim; Kane, Maureen; Kelly, Deirdre; Kelly, Dominic; Knight, Samantha J L; Kreins, Alexandra Y; Kvikstad, Erika M; Langman, Craig B; Lester, Tracy; Lines, Kate E; Lord, Simon R; Lu, Xin; Mansour, Sahar; Manzur, Adnan; Maroofian, Reza; Marsden, Brian; Mason, Joanne; McGowan, Simon J; Mei, Davide; Mlcochova, Hana; Murakami, Yoshiko; Németh, Andrea H; Okoli, Steven; Ormondroyd, Elizabeth; Ousager, Lilian Bomme; Palace, Jacqueline; Patel, Smita Y; Pentony, Melissa M; Pugh, Chris; Rad, Aboulfazl; Ramesh, Archana; Riva, Simone G; Roberts, Irene; Roy, Noémi; Salminen, Outi; Schilling, Kyleen D; Scott, Caroline; Sen, Arjune; Smith, Conrad; Stevenson, Mark; Thakker, Rajesh V; Twigg, Stephen R F; Uhlig, Holm H; van Wijk, Richard; Vona, Barbara; Wall, Steven; Wang, Jing; Watkins, Hugh; Zak, Jaroslav; Schuh, Anna H; Kini, Usha; Wilkie, Andrew O M; Popitsch, Niko; Taylor, Jenny C
SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.
Bhat, Pooja; Cabrera-Quio, Luis E; Herzog, Veronika A; Fasching, Nina; Pauli, Andrea; Ameres, Stefan L
A Rapid, Highly Sensitive and Open-Access SARS-CoV-2 Detection Assay for Laboratory and Home Testing.
Kellner, Max J; Ross, James J; Schnabl, Jakob; Dekens, Marcus P S; Matl, Martin; Heinen, Robert; Grishkovskaya, Irina; Bauer, Benedikt; Stadlmann, Johannes; Menéndez-Arias, Luis; Straw, Andrew D; Fritsche-Polanz, Robert; Traugott, Marianna; Seitz, Tamara; Zoufaly, Alexander; Födinger, Manuela; Wenisch, Christoph; Zuber, Johannes; Pauli, Andrea; Brennecke, Julius
Transcriptome-Wide Profiling of RNA Stability.
Fasching, Nina; Petrzílek, Jan; Popitsch, Niko; Herzog, Veronika A; Ameres, Stefan L
SLAMseq resolves the kinetics of maternal and zygotic gene expression in early zebrafish embryogenesis
Bhat, Pooja; Cabrera-Quio, Luis E.; Herzog, Veronika A.; Fasching, Nina; Pauli, Andrea; Ameres, Stefan L.
Hijacking of transcriptional condensates by endogenous retroviruses.
Asimi, Vahid; Sampath Kumar, Abhishek; Niskanen, Henri; Riemenschneider, Christina; Hetzel, Sara; Naderi, Julian; Fasching, Nina; Popitsch, Niko; Du, Manyu; Kretzmer, Helene; Smith, Zachary D; Weigert, Raha; Walther, Maria; Mamde, Sainath; Meierhofer, David; Wittler, Lars; Buschow, René; Timmermann, Bernd; Cisse, Ibrahim I; Ameres, Stefan L; Meissner, Alexander; Hnisz, Denes
GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data.
Giacopuzzi, Edoardo; Popitsch, Niko; Taylor, Jenny C
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.
Huth, Michelle; Santini, Laura; Galimberti, Elena; Ramesmayer, Julia; Titz-Teixeira, Fabian; Sehlke, Robert; Oberhuemer, Michael; Stummer, Sarah; Herzog, Veronika; Garmhausen, Marius; Romeike, Merrit; Chugunova, Anastasia; Leesch, Friederike; Holcik, Laurenz; Weipoltshammer, Klara; Lackner, Andreas; Schoefer, Christian; von Haeseler, Arndt; Buecker, Christa; Pauli, Andrea; Ameres, Stefan L; Smith, Austin; Beyer, Andreas; Leeb, Martin
Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets.
Bhat, Pooja; Burkard, Thomas R; Herzog, Veronika A; Pauli, Andrea; Ameres, Stefan L
Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq.
Yelagandula, Ramesh; Bykov, Aleksandr; Vogt, Alexander; Heinen, Robert; Özkan, Ezgi; Strobl, Marcus Martin; Baar, Juliane Christina; Uzunova, Kristina; Hajdusits, Bence; Kordic, Darja; Suljic, Erna; Kurtovic-Kozaric, Amina; Izetbegovic, Sebija; Schaeffer, Justine; Hufnagl, Peter; Zoufaly, Alexander; Seitz, Tamara; VCDI; Födinger, Manuela; Allerberger, Franz; Stark, Alexander; Cochella, Luisa; Elling, Ulrich
Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion.
Herzog, Veronika A; Fasching, Nina; Ameres, Stefan L
Conformation of sister chromatids in the replicated human genome.
Mitter, Michael; Gasser, Catherina; Takacs, Zsuzsanna; Langer, Christoph C H; Tang, Wen; Jessberger, Gregor; Beales, Charlie T; Neuner, Eva; Ameres, Stefan L; Peters, Jan-Michael; Goloborodko, Anton; Micura, Ronald; Gerlich, Daniel W
Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Xie, Wei; Sowemimo, Ivica; Hayashi, Rippei; Wang, Juncheng; Burkard, Thomas R; Brennecke, Julius; Ameres, Stefan L; Patel, Dinshaw J
Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets
Neumann, T; Herzog, VA; Muhar, M; von Haeseler, A; Zuber, J; Ameres, SL; Rescheneder, P
Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
Kroupova, Alena; Ivascu, Anastasia; Reimão-Pinto, Madalena M; Ameres, Stefan L; Jinek, Martin
Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
Matsushima, Wayo; Herzog, Veronika A; Neumann, Tobias; Gapp, Katharina; Zuber, Johannes; Ameres, Stefan L; Miska, Eric A
Systematic identification and functional characterization of transcriptional regulators
The mineralosphere as microhabitat for microbe, mineral and organic matter interaction in soils
Activation and regulation of plant immunity by secreted signaling peptides
Transcription start site selection is environmentally controlled to diversify the proteome in eukaryotes
How evolutionary interplay between sexes can help us define phenotypes and develop drugs
Mining for protein-protein interactions with AlphaFold: Lessons from Genome Maintenance
Title to be announced
The magical Martian Methane mystery and other stories about life on Mars
Probing life at the nanoscale - one molecule at a time
The Underworld of Deep-Sea Hydrothermal Vents
Epigenetic regulation of germline development
Sister chromatid cohesion is mediated by individual cohesin complexes
Origin and evolution of a defensive symbiosis in tortoise leaf beetles
Capturing conformational transitions in the ubiquitin conjugation cascade
18th Microsymposium on RNA Biology
The „Microsymposium on RNA Biology“ is an international conference that brings together young scientists, junior and senior group leaders, and company representatives from all over the world to present and discuss their latest findings in the exciting field of small RNAs and beyond. The Microsymposium was founded in 2005 and has established itself as the major small RNA meeting in Europe. It is organized by the four research institutions IMBA, IMP, GMI and the Max Perutz Labs as well as by the RNA community of the Vienna BioCenter.
Transformation Reactions of Organic Contaminants and Oxygen: From Field Sites to Reaction Mechanisms
Title to be announced
Multiscale plant bioimaging using advanced microscopy
Parthenogenesis, cryptobiosis, and the survival in extreme environmental conditions
Evading ageing: Mitochondrial and proteostatic adaptations in oocytes
Ubiquitin & Friends Symposium 2024
The Ubiquitin & Friends Symposium is an annual international meeting taking place in the beautiful capital of Austria, aiming to bring together scholars from various fields studying ubiquitin/Ubl biology and protein degradation in a personal, family-like atmosphere, as suggested by the name.
Genomes in Rhodnius prolixus symbiotic system
Stem cells, immune evasion and metastasis in colorectal cancer
The evolution and development of mollusc shells
Unraveling the Complexity of Crossover Regulation in C. elegans
Dynamics of 3D Genome Structure and Function
How superworms can help to solve our plastic waste crisis
New players in an old pathway: biology of methanogens of the TACK superphylum
Shaping morphogen gradients: from molecules to tissues and back
Studying stressed cells by in situ structural biology
Exploring Microbial Resilience: Unravelling Escherichia coliand#x27;s Stress Response at the Level of Protein Synthesis
Deep homology and deep diversity: Evolving genetic toolkits for making and sensing light
The evolution of cell type identity and tissue microecology at the fetal-maternal interface
The unanticipated roles of PICIs and phages in bacterial evolution
Origin and diversification of gut-derived organs in chordates
Job's Dilemma for the Genome: Why Bad Things Happen to Good Chromosomes
Connections between carbon and nitrogen cycling in the ocean
Understanding how the DNA-loop-extruding protein complex Condensin folds a chromatinized genome into mitotic chromosomes
From Roads to Rivers? Occurrence and environmental fate of tire and road wear particles and of tire-related chemicals
Striking physiology and cell biology of (marine) environmental microorganisms
Mechanisms controlling maintenance of cohesin dependent loops
Title to be announced