A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
Zhang, Runxuan; Kuo, Richard; Coulter, Max; Calixto, Cristiane P G; Entizne, Juan Carlos; Guo, Wenbin; Marquez, Yamile; Milne, Linda; Riegler, Stefan; Matsui, Akihiro; Tanaka, Maho; Harvey, Sarah; Gao, Yubang; Wießner-Kroh, Theresa; Paniagua, Alejandro; Crespi, Martin; Denby, Katherine; Hur, Asa Ben; Huq, Enamul; Jantsch, Michael; Jarmolowski, Artur; Koester, Tino; Laubinger, Sascha; Li, Qingshun Quinn; Gu, Lianfeng; Seki, Motoaki; Staiger, Dorothee; Sunkar, Ramanjulu; Szweykowska-Kulinska, Zofia; Tu, Shih-Long; Wachter, Andreas; Waugh, Robbie; Xiong, Liming; Zhang, Xiao-Ning; Conesa, Ana; Reddy, Anireddy S N; Barta, Andrea; Kalyna, Maria; Brown, John W S
Light regulates alternative splicing outcomes via the TOR kinase pathway.
Riegler, Stefan; Servi, Lucas; Scarpin, M Regina; Godoy Herz, Micaela A; Kubaczka, María G; Venhuizen, Peter; Meyer, Christian; Brunkard, Jacob O; Kalyna, Maria; Barta, Andrea; Petrillo, Ezequiel
Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing.
Fuchs, Armin; Riegler, Stefan; Ayatollahi, Zahra; Cavallari, Nicola; Giono, Luciana E; Nimeth, Barbara A; Mutanwad, Krishna V; Schweighofer, Alois; Lucyshyn, Doris; Barta, Andrea; Petrillo, Ezequiel; Kalyna, Maria
The Cyclin Dependent Kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.
Cavallari, Nicola; Nibau, Candida; Fuchs, Armin; Dadarou, Despoina; Barta, Andrea; Doonan, John H
RNA in Disease and development
Barta, Andrea; Jantsch, Michael F
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.
Zhang, Runxuan; Calixto, Cristiane P G; Marquez, Yamile; Venhuizen, Peter; Tzioutziou, Nikoleta A; Guo, Wenbin; Spensley, Mark; Entizne, Juan Carlos; Lewandowska, Dominika; Ten Have, Sara; Frei Dit Frey, Nicolas; Hirt, Heribert; James, Allan B; Nimmo, Hugh G; Barta, Andrea; Kalyna, Maria; Brown, John W S
The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.
Aronica, Lucia; Kasparek, Torben; Ruchman, David; Marquez, Yamile; Cipak, Lubos; Cipakova, Ingrid; Anrather, Dorothea; Mikolaskova, Barbora; Radtke, Maximilian; Sarkar, Sovan; Pai, Chen-Chun; Blaikley, Elizabeth; Walker, Carol; Shen, Kuo-Fang; Schroeder, Renee; Barta, Andrea; Forsburg, Susan L; Humphrey, Timothy C
Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity.
Marquez, Yamile; Höpfler, Markus; Ayatollahi, Zahra; Barta, Andrea; Kalyna, Maria
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang, Runxuan; Calixto, Cristiane P G; Tzioutziou, Nikoleta A; James, Allan B; Simpson, Craig G; Guo, Wenbin; Marquez, Yamile; Kalyna, Maria; Patro, Rob; Eyras, Eduardo; Barta, Andrea; Nimmo, Hugh G; Brown, John W S
Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.
Brown, John W S; Simpson, Craig G; Marquez, Yamile; Gadd, Geoffrey M; Barta, Andrea; Kalyna, Maria
Shedding light on the chloroplast as a remote control of nuclear gene expression.
Godoy Herz, Micaela A; Kornblihtt, Alberto R; Barta, Andrea; Kalyna, Maria; Petrillo, Ezequiel
Let there be light: Regulation of gene expression in plants.
Petrillo, Ezequiel; Godoy Herz, Micaela A; Barta, Andrea; Kalyna, Maria; Kornblihtt, Alberto R
Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis.
Göhring, Janett; Jacak, Jaroslaw; Barta, Andrea
Suitable transfection methods for single particle tracing in plant suspension cells.
Göhring, Janett; Fulcher, Nick; Schilcher, Kurt; Barta, Andrea; Jacak, Jaroslaw
A chloroplast retrograde signal regulates nuclear alternative splicing.
Petrillo, Ezequiel; Herz, Micaela A Godoy; Fuchs, Armin; Reifer, Dominik; Fuller, John; Yanovsky, Marcelo J; Simpson, Craig; Brown, John W S; Barta, Andrea; Kalyna, Maria; Kornblihtt, Alberto R
Complexity of the alternative splicing landscape in plants.
Reddy, Anireddy S N; Marquez, Yamile; Kalyna, Maria; Barta, Andrea
Introns of plant pri-miRNAs enhance miRNA biogenesis.
Bielewicz, Dawid; Kalak, Malgorzata; Kalyna, Maria; Windels, David; Barta, Andrea; Vazquez, Franck; Szweykowska-Kulinska, Zofia; Jarmolowski, Artur
Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity.
Bannikova, Olga; Zywicki, Marek; Marquez, Yamile; Skrahina, Tatsiana; Kalyna, Maria; Barta, Andrea
Alternative splicing in plants - coming of age.
Syed, Naeem H; Kalyna, Maria; Marquez, Yamile; Barta, Andrea; Brown, John W S
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
Yamile Marquez, John W.S. Brown, Craig Simpson, Andrea Barta, Maria Kalyna
Voyage of the Starships: giant transposons as crucibles of evolution
Parthenogenesis, cryptobiosis, and the survival in extreme environmental conditions
Evading ageing: Mitochondrial and proteostatic adaptations in oocytes
Genomes in Rhodnius prolixus symbiotic system
Stem cells, immune evasion and metastasis in colorectal cancer
Ubiquitin & Friends Symposium 2024
The Ubiquitin & Friends Symposium is an annual international meeting taking place in the beautiful capital of Austria, aiming to bring together scholars from various fields studying ubiquitin/Ubl biology and protein degradation in a personal, family-like atmosphere, as suggested by the name.
The evolution and development of mollusc shells
Unraveling the Complexity of Crossover Regulation in C. elegans
Dynamics of 3D Genome Structure and Function
How superworms can help to solve our plastic waste crisis
Title to be announced
New players in an old pathway: biology of methanogens of the TACK superphylum
Shaping morphogen gradients: from molecules to tissues and back
Title to be announced
Studying stressed cells by in situ structural biology
Exploring Microbial Resilience: Unravelling Escherichia coliand#x27;s Stress Response at the Level of Protein Synthesis
Arbuscular mycorrhiza development and function
Deep homology and deep diversity: Evolving genetic toolkits for making and sensing light
The evolution of cell type identity and tissue microecology at the fetal-maternal interface
The unanticipated roles of PICIs and phages in bacterial evolution
Chemical targeting of subcellular protein localization
Origin and diversification of gut-derived organs in chordates
Job's Dilemma for the Genome: Why Bad Things Happen to Good Chromosomes
Connections between carbon and nitrogen cycling in the ocean
Understanding how the DNA-loop-extruding protein complex Condensin folds a chromatinized genome into mitotic chromosomes
DrugMap: A quantitative pan-cancer analysis of cysteine ligandability
From Roads to Rivers? Occurrence and environmental fate of tire and road wear particles and of tire-related chemicals
FENS 2024 Satellite event: Home cage behavior monitoring at the interface of animal welfare and neuroscience
Striking physiology and cell biology of (marine) environmental microorganisms
Mechanisms controlling maintenance of cohesin dependent loops
Title to be announced