At-RS31 orchestrates hierarchical cross-regulation of splicing factors and integrates alternative splicing with TOR-ABA pathways.
Köster Tino, Venhuizen Peter, Lewinski Martin, Petrillo Ezequiel, Marquez Yamile, Fuchs Armin, Ray Debashish, Nimeth Barbara A, Riegler Stefan, Franzmeier Sophie, Rodríguez Florencia S, Aballay Federico E, Tognacca Rocío S, Zheng Hong, Hughes Timothy, Morris Quaid, Barta Andrea, Staiger Dorothee, Kalyna Maria
At-RS31 orchestrates hierarchical cross-regulation of splicing factors and integrates alternative splicing with TOR-ABA pathways.
Köster Tino, Venhuizen Peter, Lewinski Martin, Petrillo Ezequiel, Marquez Yamile, Fuchs Armin, Ray Debashish, Nimeth Barbara A, Riegler Stefan, Franzmeier Sophie, Zheng Hong, Hughes Timothy, Morris Quaid, Barta Andrea, Staiger Dorothee, Kalyna Maria
Focus on RNA biology.
Eckardt Nancy A, Axtell Michael J, Barta Andrea, Chen Xuemei, Gregory Brian D, Guo Hongwei, Manavella Pablo A, Mosher Rebecca A, Meyers Blake C
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
Zhang Runxuan, Kuo Richard, Coulter Max, Calixto Cristiane P G, Entizne Juan Carlos, Guo Wenbin, Marquez Yamile, Milne Linda, Riegler Stefan, Matsui Akihiro, Tanaka Maho, Harvey Sarah, Gao Yubang, Wießner-Kroh Theresa, Paniagua Alejandro, Crespi Martin, Denby Katherine, Hur Asa Ben, Huq Enamul, Jantsch Michael, Jarmolowski Artur, Koester Tino, Laubinger Sascha, Li Qingshun Quinn, Gu Lianfeng, Seki Motoaki, Staiger Dorothee, Sunkar Ramanjulu, Szweykowska-Kulinska Zofia, Tu Shih-Long, Wachter Andreas, Waugh Robbie, Xiong Liming, Zhang Xiao-Ning, Conesa Ana, Reddy Anireddy S N, Barta Andrea, Kalyna Maria, Brown John W S
Light regulates alternative splicing outcomes via the TOR kinase pathway.
Riegler Stefan, Servi Lucas, Scarpin M Regina, Godoy Herz Micaela A, Kubaczka María G, Venhuizen Peter, Meyer Christian, Brunkard Jacob O, Kalyna Maria, Barta Andrea, Petrillo Ezequiel
Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing.
Fuchs Armin, Riegler Stefan, Ayatollahi Zahra, Cavallari Nicola, Giono Luciana E, Nimeth Barbara A, Mutanwad Krishna V, Schweighofer Alois, Lucyshyn Doris, Barta Andrea, Petrillo Ezequiel, Kalyna Maria
The cyclin-dependent kinase G group defines a thermo-sensitive alternative splicing circuit modulating the expression of Arabidopsis ATU2AF65A.
Cavallari Nicola, Nibau Candida, Fuchs Armin, Dadarou Despoina, Barta Andrea, Doonan John H
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.
Zhang Runxuan, Calixto Cristiane P G, Marquez Yamile, Venhuizen Peter, Tzioutziou Nikoleta A, Guo Wenbin, Spensley Mark, Entizne Juan Carlos, Lewandowska Dominika, Ten Have Sara, Frei Dit Frey Nicolas, Hirt Heribert, James Allan B, Nimmo Hugh G, Barta Andrea, Kalyna Maria, Brown John W S
RNA in Disease and development.
Barta Andrea, Jantsch Michael F
Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.
Brown John W S, Simpson Craig G, Marquez Yamile, Gadd Geoffrey M, Barta Andrea, Kalyna Maria
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang Runxuan, Calixto Cristiane P G, Tzioutziou Nikoleta A, James Allan B, Simpson Craig G, Guo Wenbin, Marquez Yamile, Kalyna Maria, Patro Rob, Eyras Eduardo, Barta Andrea, Nimmo Hugh G, Brown John W S
Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity.
Marquez Yamile, Höpfler Markus, Ayatollahi Zahra, Barta Andrea, Kalyna Maria
Let there be light: regulation of gene expression in plants.
Petrillo Ezequiel, Godoy Herz Micaela A, Barta Andrea, Kalyna Maria, Kornblihtt Alberto R
Suitable transfection methods for single particle tracing in plant suspension cells.
Göhring Janett, Fulcher Nick, Schilcher Kurt, Barta Andrea, Jacak Jaroslaw
Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis.
Göhring Janett, Jacak Jaroslaw, Barta Andrea
Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity.
Bannikova Olga, Zywicki Marek, Marquez Yamile, Skrahina Tatsiana, Kalyna Maria, Barta Andrea
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.
Marquez Yamile, Brown John W S, Simpson Craig, Barta Andrea, Kalyna Maria
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.
Kalyna Maria, Simpson Craig G, Syed Naeem H, Lewandowska Dominika, Marquez Yamile, Kusenda Branislav, Marshall Jacqueline, Fuller John, Cardle Linda, McNicol Jim, Dinh Huy Q, Barta Andrea, Brown John W S
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.
Barta Andrea, Kalyna Maria, Reddy Anireddy S N
Role of Cajal bodies and nucleolus in the maturation of the U1 snRNP in Arabidopsis.
Lorković Zdravko J, Barta Andrea